You may need to use pip or easy_install to update NumPy if you get errors about this. There has been a report of an out of date NumPy version causing some issues.

Install EMAN2.1 from source (in which case you can use whatever Python 2.7.X you like).

Set up a shell script to alter your PATH and PYTHONPATH shell variables to exclude the other python when you wish to use EMAN2.1 or If you see something else, like '/usr/local/bin/python', you will have problems. If you type 'which python', you should see '/usr/bin/python'.

The EMAN2.1 binaries MUST use the OSX-provided Python distribution.

EMAN2 should now be installed and function properly.

Restart your terminal program for a fresh shell.

If you use the bash shell, add the following line to your '.profile' file: test -r /Applications/EMAN2/eman2.bashrc & source /Applications/EMAN2/eman2.bashrc Similarly, if you use the csh or tcsh shell, add the following line to '.cshrc': test -r /Applications/EMAN2/eman2.cshrc & source /Applications/EMAN2/eman2.cshrc.

Download the appropriate '.dmg' file from the nightly build page and copy the 'EMAN2' folder into '/Applications'.

Mac OS X versions 10.7 and higher are supported for EMAN2 nightly builds (10.6 is only supported in older, pre 2.1 releases).

e2proc2d.py anyimagefile bdb:test (anyimagefile is any 2d image or stack supported by eman2, this will make sure the database works).

e2projectmanager.py (if the GUI pops up, it's working).

e2speedtest.py (will also give you the relative speed to expect from your machine).

If you have any problems we need you to include the output from this command in your message)

e2version.py (make sure the displayed version is what you expect, including the timestamp.Instead, we suggest just running the following 4 basic tests: While we have unit testing, it is mainly for developers. The only known solution at present is to set English to your language.Īfter installing on any of the systems below, you should test to make sure it's working. In particular some users have reported problems with the use of ',' rather than '.' in numbers.

Note for International use - We lack sufficient manpower at present for any real internationalization support.

Macos uninstall nomachine